- name: bbmap clumpify test_bbmap_clumpify_single_end
  command: nextflow run ./tests/modules/bbmap/clumpify -entry test_bbmap_clumpify_single_end -c ./tests/config/nextflow.config  -c ./tests/modules/bbmap/clumpify/nextflow.config
  tags:
    - bbmap/clumpify
    - bbmap
  files:
    - path: output/bbmap/test.clumped.fastq.gz
    - path: output/bbmap/test.clumpify.log

- name: bbmap clumpify test_bbmap_clumpify_paired_end
  command: nextflow run ./tests/modules/bbmap/clumpify -entry test_bbmap_clumpify_paired_end -c ./tests/config/nextflow.config  -c ./tests/modules/bbmap/clumpify/nextflow.config
  tags:
    - bbmap/clumpify
    - bbmap
  files:
    - path: output/bbmap/test.clumpify.log
    - path: output/bbmap/test_1.clumped.fastq.gz
    - path: output/bbmap/test_2.clumped.fastq.gz