- name: emboss seqret test_emboss_seqret_gb2embl
  command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret_gb2embl -c ./tests/config/nextflow.config  -c ./tests/modules/emboss/seqret/nextflow.config
  tags:
    - emboss
    - emboss/seqret
  files:
    - path: output/emboss/test.embl
      md5sum: 4810933b1b2174f7067d9afa1da8b01b
      contains: ["ID   NZ_CP069563;"] # Human-readable test for correct format and sequence

- name: emboss seqret test_emboss_seqret_gb2gff
  command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret_gb2gff -c ./tests/config/nextflow.config  -c ./tests/modules/emboss/seqret/nextflow.config
  tags:
    - emboss
    - emboss/seqret
  files:
    - path: output/emboss/test.gff
      md5sum: 65720c327927edbabc63f9e76afbeb31
      contains:
        - "##gff-version 3" # Human-readable test for correct format
        - ">NZ_CP069563" # Human-readable test for correct sequence

- name: emboss seqret test_emboss_seqret_gb2pir
  command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret_gb2pir -c ./tests/config/nextflow.config  -c ./tests/modules/emboss/seqret/nextflow.config
  tags:
    - emboss
    - emboss/seqret
  files:
    - path: output/emboss/test.pir
      md5sum: 49f4a28533e970aa2438d8adf55a26bb
      contains: [">D1;NZ_CP069563"] # Human-readable test for correct format and sequence

- name: emboss seqret test_emboss_seqret_gb2fasta
  command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret_gb2fasta -c ./tests/config/nextflow.config  -c ./tests/modules/emboss/seqret/nextflow.config
  tags:
    - emboss
    - emboss/seqret
  files:
    - path: output/emboss/test.fasta
      md5sum: 0694275f05780aeb0b54d46687603f44
      contains: [">NZ_CP069563"] # Human-readable test for correct format and sequence