- name: cat fastq single-end
  command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_single_end -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config
  tags:
    - cat
    - cat/fastq
  files:
    - path: ./output/cat/test.merged.fastq.gz
      md5sum: f9cf5e375f7de81a406144a2c70cc64d

- name: cat fastq fastqc_paired_end
  command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config
  tags:
    - cat
    - cat/fastq
  files:
    - path: ./output/cat/test_2.merged.fastq.gz
      md5sum: 77c8e966e130d8c6b6ec9be52fcb2bda
    - path: ./output/cat/test_1.merged.fastq.gz
      md5sum: f9cf5e375f7de81a406144a2c70cc64d

- name: cat fastq single-end-same-name
  command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_single_end_same_name -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config
  tags:
    - cat
    - cat/fastq
  files:
    - path: ./output/cat/test.merged.fastq.gz
      md5sum: 63f817db7a29a03eb538104495556f66

- name: cat fastq fastqc_paired_end_same_name
  command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_paired_end_same_name -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config
  tags:
    - cat
    - cat/fastq
  files:
    - path: ./output/cat/test_1.merged.fastq.gz
      md5sum: 63f817db7a29a03eb538104495556f66
    - path: ./output/cat/test_2.merged.fastq.gz
      md5sum: fe9f266f43a6fc3dcab690a18419a56e

- name: cat fastq single-end stub
  command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_single_end -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config -stub-run
  tags:
    - cat
    - cat/fastq
  files:
    - path: ./output/cat/test.merged.fastq.gz

- name: cat fastq fastqc_paired_end stub
  command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config -stub-run
  tags:
    - cat
    - cat/fastq
  files:
    - path: ./output/cat/test_2.merged.fastq.gz
    - path: ./output/cat/test_1.merged.fastq.gz

- name: cat fastq single-end-same-name stub
  command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_single_end_same_name -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config -stub-run
  tags:
    - cat
    - cat/fastq
  files:
    - path: ./output/cat/test.merged.fastq.gz

- name: cat fastq fastqc_paired_end_same_name stub
  command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_paired_end_same_name -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config -stub-run
  tags:
    - cat
    - cat/fastq
  files:
    - path: ./output/cat/test_1.merged.fastq.gz
    - path: ./output/cat/test_2.merged.fastq.gz