- name: samtools merge test_samtools_merge
  command: nextflow run ./tests/modules/samtools/merge -entry test_samtools_merge -c ./tests/config/nextflow.config -c ./tests/modules/samtools/merge/nextflow.config
  tags:
    - samtools
    - samtools/merge
  files:
    - path: output/samtools/test.bam

- name: samtools merge test_samtools_merge_cram
  command: nextflow run ./tests/modules/samtools/merge -entry test_samtools_merge_cram -c ./tests/config/nextflow.config -c ./tests/modules/samtools/merge/nextflow.config
  tags:
    - samtools
    - samtools/merge
  files:
    - path: output/samtools/test.cram