- name: samtools index test_samtools_index_bai
  command: nextflow run ./tests/modules/samtools/index -entry test_samtools_index_bai -c ./tests/config/nextflow.config -c ./tests/modules/samtools/index/nextflow.config
  tags:
    - samtools
    - samtools/index
  files:
    - path: output/samtools/test.paired_end.sorted.bam.bai
      md5sum: 704c10dd1326482448ca3073fdebc2f4

- name: samtools index test_samtools_index_crai
  command: nextflow run ./tests/modules/samtools/index -entry test_samtools_index_crai -c ./tests/config/nextflow.config -c ./tests/modules/samtools/index/nextflow.config
  tags:
    - samtools
    - samtools/index
  files:
    - path: output/samtools/test.paired_end.recalibrated.sorted.cram.crai
      md5sum: 14bc3bd5c89cacc8f4541f9062429029

- name: samtools index test_samtools_index_csi
  command: nextflow run ./tests/modules/samtools/index -entry test_samtools_index_csi -c ./tests/config/nextflow.config -c ./tests/modules/samtools/index/nextflow.config
  tags:
    - samtools
    - samtools/index
  files:
    - path: output/samtools/test.paired_end.sorted.bam.csi
      md5sum: 3dd9e3ed959fca075b88bb8dc3cf7dbd