process BANDAGE_IMAGE { tag "${meta.id}" label 'process_low' conda (params.enable_conda ? 'bioconda::bandage=0.8.1' : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/bandage:0.8.1--hc9558a2_2' : 'quay.io/biocontainers/bandage:0.8.1--hc9558a2_2' }" input: tuple val(meta), path(gfa) output: tuple val(meta), path('*.png'), emit: png tuple val(meta), path('*.svg'), emit: svg path "versions.yml" , emit: versions when: task.ext.when == null || task.ext.when script: def args = task.ext.args ?: '' def prefix = task.ext.prefix ?: "${meta.id}" """ Bandage image $gfa ${prefix}.png $args Bandage image $gfa ${prefix}.svg $args cat <<-END_VERSIONS > versions.yml "${task.process}": bandage: \$(echo \$(Bandage --version 2>&1) | sed 's/^.*Version: //; s/ .*\$//') END_VERSIONS """ }