name: deeptools_plotprofile description: plots values produced by deeptools_computematrix as a profile plot keywords: - plot - profile - scores - matrix tools: - deeptools: description: A set of user-friendly tools for normalization and visualization of deep-sequencing data homepage: documentation: https://deeptools.readthedocs.io/en/develop/index.html tool_dev_url: https://github.com/deeptools/deepTools doi: "10.1093/nar/gku365" licence: ['GPL v3'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test' ] - matrix: type: file description: | gzipped matrix file produced by deeptools_ computematrix deeptools utility pattern: "*.{mat.gz}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - pdf: type: file description: | Output figure containing resulting plot pattern: "*.{plotProfile.pdf}" - matrix: type: file description: | File containing the matrix of values used to generate the profile pattern: "*.{plotProfile.mat.tab}" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@emiller88" - "@drpatelh" - "@joseespinosa"