process DEEPTOOLS_PLOTPROFILE { tag "$meta.id" label 'process_low' conda (params.enable_conda ? 'bioconda::deeptools=3.5.1' : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/deeptools:3.5.1--py_0' : 'quay.io/biocontainers/deeptools:3.5.1--py_0' }" input: tuple val(meta), path(matrix) output: tuple val(meta), path("*.pdf"), emit: pdf tuple val(meta), path("*.tab"), emit: table path "versions.yml" , emit: versions when: task.ext.when == null || task.ext.when script: def args = task.ext.args ?: '' def prefix = task.ext.prefix ?: "${meta.id}" """ plotProfile \\ $args \\ --matrixFile $matrix \\ --outFileName ${prefix}.plotProfile.pdf \\ --outFileNameData ${prefix}.plotProfile.tab cat <<-END_VERSIONS > versions.yml "${task.process}": deeptools: \$(plotProfile --version | sed -e "s/plotProfile //g") END_VERSIONS """ }