- name: gatk4 variantfiltration test_gatk4_variantfiltration
  command: nextflow run tests/software/gatk4/variantfiltration -entry test_gatk4_variantfiltration -c tests/config/nextflow.config
  tags:
    - gatk4_variantfiltration
    - gatk4
  files:
    - path: output/gatk4/test.filtered.vcf
      contains:
        - "AC=2;AN=2;DP=1;DP4=0,0,1,0;MQ=60;MQ0F=0;SGB=-0.379885"