- name: samtools collate test_samtools_collate
  command: nextflow run ./tests/modules/samtools/collate -entry test_samtools_collate -c ./tests/config/nextflow.config  -c ./tests/modules/samtools/collate/nextflow.config
  tags:
    - samtools/collate
    - samtools
  files:
    - path: output/samtools/test.bam
      md5sum: dbb8244c28778a970e49577731b158df

- name: samtools collate test_samtools_collate_cram
  command: nextflow run ./tests/modules/samtools/collate -entry test_samtools_collate_cram -c ./tests/config/nextflow.config  -c ./tests/modules/samtools/collate/nextflow.config
  tags:
    - samtools/collate
    - samtools
  files:
    - path: output/samtools/test.bam
      md5sum: 81aa61ed1f6f3bf6b9c94f70cbf2a177