- name: entrezdirect esearch test_entrezdirect_esearch_pubmed
  command: nextflow run ./tests/modules/entrezdirect/esearch -entry test_entrezdirect_esearch_pubmed -c ./tests/config/nextflow.config  -c ./tests/modules/entrezdirect/esearch/nextflow.config
  tags:
    - entrezdirect/esearch
    - entrezdirect
  files:
    - path: output/entrezdirect/test_pubmed.xml
      contains:
        - "<ENTREZ_DIRECT>"
        - "<Db>pubmed</Db>"
        - "<WebEnv>"
        - "<QueryKey>"
        - "<Step>"
        - "<Count>"
        - "</ENTREZ_DIRECT>"

- name: entrezdirect esearch test_entrezdirect_esearch_genome
  command: nextflow run ./tests/modules/entrezdirect/esearch -entry test_entrezdirect_esearch_genome -c ./tests/config/nextflow.config  -c ./tests/modules/entrezdirect/esearch/nextflow.config
  tags:
    - entrezdirect/esearch
    - entrezdirect
  files:
    - path: output/entrezdirect/test_genome.xml
      contains:
        - "<ENTREZ_DIRECT>"
        - "<Db>genome</Db>"
        - "<WebEnv>"
        - "<QueryKey>"
        - "<Count>"
        - "<Step>"
        - "</ENTREZ_DIRECT>"

- name: entrezdirect esearch test_entrezdirect_esearch_assembly
  command: nextflow run ./tests/modules/entrezdirect/esearch -entry test_entrezdirect_esearch_assembly -c ./tests/config/nextflow.config  -c ./tests/modules/entrezdirect/esearch/nextflow.config
  tags:
    - entrezdirect/esearch
    - entrezdirect
  files:
    - path: output/entrezdirect/test_assembly.xml
      contains:
        - "<ENTREZ_DIRECT>"
        - "<Db>assembly</Db>"
        - "<WebEnv>"
        - "<QueryKey>"
        - "<Count>"
        - "<Step>"
        - "</ENTREZ_DIRECT>"