name: nanoplot description: Run NanoPlot on nanopore-sequenced reads keywords: - quality control - qc - fastq - sequencing summary - nanopore tools: - nanoplot: description: | NanoPlot is a tool for ploting long-read sequencing data and alignment. homepage: http://nanoplot.bioinf.be documentation: https://github.com/wdecoster/NanoPlot licence: ["GPL-3.0-or-later"] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - fastq: type: file description: | List of input basecalled-FastQ files. - summary_txt: type: file description: | List of sequencing_summary.txt files from running basecalling. output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - html: type: file description: NanoPlot report pattern: "*{.html}" - png: type: file description: Plots generated by NanoPlot pattern: "*{.png}" - txt: type: file description: Stats from NanoPlot pattern: "*{.txt}" - log: type: file description: log file of NanoPlot run pattern: "*{.log}" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@drpatelh" - "@yuukiiwa"