#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { FARGENE } from '../../../modules/fargene/main.nf' addParams( options: [:] )

workflow test_fargene {
    
    input = [ [ id:'test', single_end:false ], // meta map
              file(params.test_data['bacteroides_fragilis']['illumina']['test1_contigs_fa_gz'], checkIfExists: true) ]
    hmm_model = 'class_a'

    FARGENE ( input, hmm_model )
}