#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { MAXQUANT_LFQ } from '../../../../modules/maxquant/lfq/main.nf' addParams( options: [:] )

workflow test_maxquant_lfq {
        
    input = [ [ id:'test' ], // meta map
              file(params_test_data['proteomics']['database']['yeast_ups']), checkIfExists: true), file(params_test_data['proteomics']['parameter']['maxquant'] , checkIfExists: true) 
            ]


    rawfiles = [file(params_test_data['proteomics']['msspectra']['ups_file1']) , file(params_test_data['proteomics']['msspectra']['ups_file2']) ]

    MAXQUANT_LFQ ( input, rawfiles.collect() )
}