name: deeptools_plotfingerprint description: plots cumulative reads coverages by BAM file keywords: - plot - fingerprint - cumulative coverage - bam tools: - deeptools: description: A set of user-friendly tools for normalization and visualization of deep-sequencing data homepage: documentation: https://deeptools.readthedocs.io/en/develop/index.html tool_dev_url: https://github.com/deeptools/deepTools doi: "10.1093/nar/gku365" licence: ['GPL v3'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test' ] - bam: type: file description: One or more BAM files pattern: "*.{bam}" - bais: type: file description: Corresponding BAM file indexes pattern: "*.bam.bai" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - pdf: type: file description: | Output figure containing resulting plot pattern: "*.{plotFingerprint.pdf}" - matrix: type: file description: | Output file summarizing the read counts per bin pattern: "*.{plotFingerprint.raw.txt}" - metrics: type: file description: | file containing BAM file quality metrics pattern: "*.{qcmetrics.txt}" - version: type: file description: File containing software version pattern: "versions.yml" authors: - "@emiller88" - "@drpatelh" - "@joseespinosa"