name: diamond_blastp
description: Queries a DIAMOND database using blastp mode
keywords:
  - fasta
  - diamond
  - blastp
  - DNA sequence
tools:
  - diamond:
    description: Accelerated BLAST compatible local sequence aligner
    homepage: https://github.com/bbuchfink/diamond
    documentation: https://github.com/bbuchfink/diamond/wiki
    tool_dev_url: https://github.com/bbuchfink/diamond
    doi: "doi:10.1038/s41592-021-01101-x"
    licence: ['GPL v3.0']

input:
  - meta:
        type: map
        description: |
          Groovy Map containing sample information
          e.g. [ id:'test', single_end:false ]
  - fasta:
        type: file
        description: Input fasta file containing query sequences
        pattern: "*.{fa,fasta}"
  - db:
        type: directory
        description: Directory containing the protein blast database
        pattern: "*"

output:
  - txt:
        type: file
        description: File containing blastp hits
        pattern: "*.{blastp.txt}"
  - version:
        type: file
        description: File containing software version
        pattern: "versions.yml"

authors:
  - "@spficklin"