name: rasusa
description: Randomly subsample sequencing reads to a specified coverage
keywords:
  - coverage
  - depth
  - subsampling
tools:
  - rasusa:
      description: Randomly subsample sequencing reads to a specified coverage
      homepage: https://github.com/mbhall88/rasusa
      documentation: https://github.com/mbhall88/rasusa/blob/master/README.md
      tool_dev_url: https://github.com/mbhall88/rasusa
      doi: "10.5281/zenodo.3731394"
      licence: ['MIT']

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - reads:
        type: file
        description: List of input paired-end FastQ files
  - genome_size:
        type: string
        description: Genome size of the species
  - depth_cutoff:
        type: integer
        description: Depth of coverage cutoff

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - version:
      type: file
      description: File containing software version
      pattern: "versions.yml"
  - reads:
      type: file
      description: Reads with subsampled coverage
      pattern: "*.fastq.gz"

authors:
  - "@thanhleviet"