name: rseqc_bamstat description: Generate statistics from a bam file keywords: - bam - qc - bamstat tools: - rseqc: description: | RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. homepage: http://rseqc.sourceforge.net/ documentation: http://rseqc.sourceforge.net/ doi: 10.1093/bioinformatics/bts356 input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - bam: type: file description: the bam file to calculate statistics of pattern: "*.{bam}" output: - txt: type: file description: bam statistics report pattern: "*.bam_stat.txt" - version: type: file description: File containing software version pattern: "versions.yml" authors: - "@drpatelh" - "@kevinmenden"