name: "tailfindr"
description: Estimating poly(A)-tail lengths from basecalled fast5 files produced by Nanopore sequencing of RNA and DNA
keywords:
  - polyA
  - fast5
tools:
  - "tailfindr":
      description: "An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads."
      homepage: "https://github.com/adnaniazi/tailfindr"
      documentation: "https://github.com/adnaniazi/tailfindr/blob/master/README.md"
      tool_dev_url: "https://github.com/adnaniazi/tailfindr"
      doi: "10.1261/rna.071332.119"
      licence: "['AGPL v3']"

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test' ]
  - fast5:
      type: file
      description: fast5 file
      pattern: "*.fast5"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test' ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - csv_gz:
      type: file
      description: Compressed csv file
      pattern: "*.csv.gz"

authors:
  - "@lucacozzuto"