name: fgbio_callmolecularconsensusreads description: Calls consensus sequences from reads with the same unique molecular tag. keywords: - UMIs - consensus sequence - bam - sam tools: - fgbio: description: Tools for working with genomic and high throughput sequencing data. homepage: https://github.com/fulcrumgenomics/fgbio documentation: http://fulcrumgenomics.github.io/fgbio/ licence: ['MIT'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false, collapse:false ] - bam: type: file description: | The input SAM or BAM file. pattern: "*.{bam,sam}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - bam: type: file description: | Output SAM or BAM file to write consensus reads. pattern: "*.{bam,sam}" - version: type: file description: File containing software version pattern: "*.{version.txt}" authors: - "@sruthipsuresh"