name: quast description: Quality Assessment Tool for Genome Assemblies keywords: - quast - assembly - quality tools: - quast: description: | QUAST calculates quality metrics for genome assemblies homepage: http://bioinf.spbau.ru/quast doi: https://doi.org/10.1093/bioinformatics/btt086 licence: ['GPL-2.0-only'] input: - consensus: type: file description: | Fasta file containing the assembly of interest - fasta: type: file description: | The genome assembly to be evaluated. Has to contain at least a non-empty string dummy value. - use_fasta: type: boolean description: Whether to use the provided fasta reference genome file - gff: type: file description: The genome GFF file. Has to contain at least a non-empty string dummy value. - use_gff: type: boolean description: Whether to use the provided gff reference annotation file output: - quast: type: directory description: Directory containing complete quast report pattern: "{prefix}.lineage_report.csv" - report: - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@drpatelh" - "@kevinmenden"