process {

    publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }

    withName: UMITOOLS_EXTRACT {
        ext.args = '--bc-pattern="NNNN"'
    }

    withName: UMITOOLS_DEDUP {
        ext.args = ''
        ext.prefix = 'dedup'
    }

    withName: BWA_MEM {
        ext.args2 = ''
    }
}