name: fasttree
description: Produces a Newick format phylogeny from a multiple sequence alignment. Capable of bacterial genome size alignments.
keywords:
  - phylogeny
  - newick
tools:
  - fasttree:
      description: FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences
      homepage: http://www.microbesonline.org/fasttree/
      documentation: http://www.microbesonline.org/fasttree/#Usage
      tool_dev_url: None
      doi: ""
      licence: ["GPL v2"]

input:
  - alignment:
      type: file
      description: A FASTA format multiple sequence alignment file
      pattern: "*.{fasta,fas,fa,mfa}"

output:
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - phylogeny:
      type: file
      description: A phylogeny in Newick format
      pattern: "*.{tre}"

authors:
  - "@aunderwo"