def VERSION = '4.11' // Version information not provided by tool on CLI process HOMER_ANNOTATEPEAKS { tag "$meta.id" label 'process_medium' conda (params.enable_conda ? "bioconda::homer=4.11" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/homer:4.11--pl526hc9558a2_3' : 'quay.io/biocontainers/homer:4.11--pl526hc9558a2_3' }" input: tuple val(meta), path(peak) path fasta path gtf output: tuple val(meta), path("*annotatePeaks.txt"), emit: txt path "versions.yml" , emit: versions when: task.ext.when == null || task.ext.when script: def args = task.ext.args ?: '' def prefix = task.ext.prefix ?: "${meta.id}" """ annotatePeaks.pl \\ $peak \\ $fasta \\ $args \\ -gtf $gtf \\ -cpu $task.cpus \\ > ${prefix}.annotatePeaks.txt cat <<-END_VERSIONS > versions.yml "${task.process}": homer: $VERSION END_VERSIONS """ }