name: dastool_scaffolds2bin description: Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format keywords: - binning - das tool - table - de novo - bins - contigs - assembly - das_tool tools: - dastool: description: | DAS Tool is an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly. homepage: https://github.com/cmks/DAS_Tool documentation: https://github.com/cmks/DAS_Tool tool_dev_url: https://github.com/cmks/DAS_Tool doi: "10.1038/s41564-018-0171-1" licence: ["BSD"] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - fasta: type: file description: Fasta or list of fasta files recommended to be gathered via with .collect() of bins pattern: "*.{fa,fa.gz,fas,fas.gz,fna,fna.gz,fasta,fasta.gz}" - extension: type: val description: Fasta file extension (fa | fas | fasta | ...), but without .gz suffix, even if gzipped input. output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - versions: type: file description: File containing software versions pattern: "versions.yml" - scaffolds2bin: type: file description: tabular scaffolds2bin file for DAS tool input pattern: "*.scaffolds2bin.tsv" authors: - "@maxibor"