- name: lofreq callparallel test_lofreq_callparallel
  command: nextflow run ./tests/modules/lofreq/callparallel -entry test_lofreq_callparallel -c ./tests/config/nextflow.config -c ./tests/modules/lofreq/callparallel/nextflow.config
  tags:
    - lofreq/callparallel
    - lofreq
  files:
    - path: output/lofreq/test.vcf.gz
      contains:
        [
          '##INFO=<ID=CONSVAR,Number=0,Type=Flag,Description="Indicates that the variant is a consensus variant (as opposed to a low frequency variant).">',
        ]