- name: haplocheck test_haplocheck
  command: nextflow run ./tests/modules/haplocheck -entry test_haplocheck -c ./tests/config/nextflow.config -c ./tests/modules/haplocheck/nextflow.config
  tags:
    - haplocheck
  files:
    - path: output/haplocheck/test.html
      md5sum: 59d69052c86edff0301816956eaf4d5f
    - path: output/haplocheck/test.raw.txt
      md5sum: 69f4e5b28a59b97fc19eb8e8b650d9d5
    - path: output/haplocheck/versions.yml
      md5sum: 94e2fa3ceb3946487319f92cea08c942

- name: haplocheck test_haplocheck using stubs
  command: nextflow run ./tests/modules/haplocheck -entry test_haplocheck -c ./tests/config/nextflow.config -c ./tests/modules/haplocheck/nextflow.config -stub-run
  tags:
    - haplocheck
  files:
    - path: output/haplocheck/test.html
    - path: output/haplocheck/test.raw.txt
    - path: output/haplocheck/versions.yml