name: "megan_daa2info" description: Analyses a DAA file and exports information in text format keywords: - megan - diamond - daa - classification - conversion tools: - "megan": description: "A tool for studying the taxonomic content of a set of DNA reads" homepage: "https://uni-tuebingen.de/fakultaeten/mathematisch-naturwissenschaftliche-fakultaet/fachbereiche/informatik/lehrstuehle/algorithms-in-bioinformatics/software/megan6/" documentation: "https://software-ab.informatik.uni-tuebingen.de/download/megan6/welcome.html" tool_dev_url: "https://github.com/husonlab/megan-ce" doi: "10.1371/journal.pcbi.1004957" licence: "['GPL >=3']" input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - daa: type: file description: DAA file from DIAMOND pattern: "*.daa" - megan_summary: type: boolean description: Specify whether to generate a MEGAN summary file output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - versions: type: file description: File containing software versions pattern: "versions.yml" - txt_gz: type: file description: Compressed text file pattern: "*.txt.gz" - megan: type: file description: Optionally generated MEGAN summary file pattern: "*.megan" authors: - "@jfy133"