#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { PORECHOP } from '../../../modules/porechop/main.nf' addParams( options: [args: '', suffix: '_porechop'] )

workflow test_porechop {

    input = [ [ id:'test', single_end:true ], // meta map
                file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true) ]

    PORECHOP ( input )
}