name: amrfinderplus_update description: Identify antimicrobial resistance in gene or protein sequences keywords: - bacteria - fasta - antibiotic resistance tools: - amrfinderplus: description: AMRFinderPlus finds antimicrobial resistance and other genes in protein or nucleotide sequences. homepage: https://github.com/ncbi/amr/wiki documentation: https://github.com/ncbi/amr/wiki tool_dev_url: https://github.com/ncbi/amr doi: "10.1038/s41598-021-91456-0" licence: ['Public Domain'] input: - input_not_required: type: null description: module does not have an input output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - versions: type: file description: File containing software versions pattern: "versions.yml" - db: type: file description: The latest AMRFinder+ database in a compressed tarball pattern: "*.tar.gz" authors: - "@rpetit3"