name: amrfinderplus_update
description: Identify antimicrobial resistance in gene or protein sequences
keywords:
  - bacteria
  - fasta
  - antibiotic resistance
tools:
  - amrfinderplus:
      description: AMRFinderPlus finds antimicrobial resistance and other genes in protein or nucleotide sequences.
      homepage: https://github.com/ncbi/amr/wiki
      documentation: https://github.com/ncbi/amr/wiki
      tool_dev_url: https://github.com/ncbi/amr
      doi: "10.1038/s41598-021-91456-0"
      licence: ['Public Domain']

input:
  - input_not_required:
      type: null
      description: module does not have an input

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - db:
      type: file
      description: The latest AMRFinder+ database in a compressed tarball
      pattern: "*.tar.gz"

authors:
  - "@rpetit3"