name: genmap_index
description: create index file for genmap
keywords:
  - index
tools:
  - genmap:
      description: Ultra-fast computation of genome mappability.
      homepage: https://github.com/cpockrandt/genmap
      documentation: https://github.com/cpockrandt/genmap
      tool_dev_url: https://github.com/cpockrandt/genmap
      doi: "10.1093/bioinformatics/btaa222"
      licence: ['BSD-3-Clause']

input:
  - fasta:
      type: file
      description: fasta file
      pattern: "*.{fasta,fa}"

output:
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - index:
      type: index
      description: Genmap index file
      pattern: "{index}.*"

authors:
  - "@jianhong"