name: "vcf2db"
description: A tool to create a Gemini-compatible DB file from an annotated VCF
keywords:
  - vcf2db
  - vcf
  - gemini
tools:
  - "vcf2db":
      description: "Create a gemini-compatible database from a VCF"
      homepage: "https://github.com/quinlan-lab/vcf2db"
      documentation: "https://github.com/quinlan-lab/vcf2db"
      tool_dev_url: "https://github.com/quinlan-lab/vcf2db"
      doi: ""
      licence: "['MIT']"

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - vcf:
      type: file
      description: VCF file
      pattern: "*.vcf.gz"
  - ped:
      type: file
      description: PED file
      pattern: "*.ped"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - db:
      type: file
      description: Gemini-compatible database file
      pattern: "*.db"

authors:
  - "@nvnieuwk"