def VERSION = '0.7.1' // Version information not provided by tool on CLI process SEQWISH_INDUCE { tag "$meta.id" label 'process_medium' conda (params.enable_conda ? 'bioconda::seqwish=0.7.1' : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/seqwish:0.7.1--h2e03b76_0' : 'quay.io/biocontainers/seqwish:0.7.1--h2e03b76_0' }" input: tuple val(meta), path(paf), path(fasta) output: tuple val(meta), path("*.gfa"), emit: gfa path "versions.yml" , emit: versions script: def args = task.ext.args ?: '' def prefix = task.ext.prefix ?: "${meta.id}" """ seqwish \\ --threads $task.cpus \\ --paf-alns=$paf \\ --seqs=$fasta \\ --gfa=${prefix}.gfa \\ $args cat <<-END_VERSIONS > versions.yml "${task.process}": seqwish: $VERSION END_VERSIONS """ }