- name: gatk4 mergebamalignment test_gatk4_mergebamalignment
  command: nextflow run ./tests/modules/gatk4/mergebamalignment -entry test_gatk4_mergebamalignment -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/mergebamalignment/nextflow.config
  tags:
    - gatk4
    - gatk4/mergebamalignment
  files:
    - path: output/gatk4/test.bam
      md5sum: e6f1b343700b7ccb94e81ae127433988
    - path: output/gatk4/versions.yml

- name: gatk4 mergebamalignment test_gatk4_mergebamalignment_stubs
  command: nextflow run ./tests/modules/gatk4/mergebamalignment -entry test_gatk4_mergebamalignment_stubs -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/mergebamalignment/nextflow.config -stub-run
  tags:
    - gatk4
    - gatk4/mergebamalignment
  files:
    - path: output/gatk4/test.bam
    - path: output/gatk4/versions.yml