params {
  outdir = "output/"
  publish_dir_mode = "copy"
  conda = false

  clip_r1 = 0
  clip_r2 = 0
  three_prime_clip_r1 = 0
  three_prime_clip_r2 = 0
}

profiles {
  conda  {
    params.conda = true
  }
  docker {
    docker.enabled = true
    docker.runOptions = '-u \$(id -u):\$(id -g)'
  }
  singularity {
    singularity.enabled = true
    singularity.autoMounts = true
  }
}