- name: gatk4 markduplicates test_gatk4_markduplicates
  command: nextflow run ./tests/modules/gatk4/markduplicates -entry test_gatk4_markduplicates -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicates/nextflow.config
  tags:
    - gatk4/markduplicates
    - gatk4
  files:
    - path: output/gatk4/test.bai
      md5sum: e9c125e82553209933883b4fe2b8d7c2
    - path: output/gatk4/test.bam
      md5sum: f94271007c1ec8e56adfdd8e45a07bd0
    - path: output/gatk4/test.metrics

- name: gatk4 markduplicates test_gatk4_markduplicates_multiple_bams
  command: nextflow run ./tests/modules/gatk4/markduplicates -entry test_gatk4_markduplicates_multiple_bams -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicates/nextflow.config
  tags:
    - gatk4/markduplicates
    - gatk4
  files:
    - path: output/gatk4/test.bai
      md5sum: bad71df9c876e72a5bc0a3e0fd755f92
    - path: output/gatk4/test.bam
      md5sum: e0462bd4fe2cf4beda71e1bd2c66235b
    - path: output/gatk4/test.metrics