- name: gatk4 applybqsr test_gatk4_applybqsr
  command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
  tags:
    - gatk4
    - gatk4/applybqsr
  files:
    - path: output/gatk4/test.bam
      md5sum: 8fe7c4b5fcfb72d24ed8102eb26e42fb
    - path: output/gatk4/versions.yml
      md5sum: 8a2fb7c7e38f24d3fefd5e84da701b00

- name: gatk4 applybqsr test_gatk4_applybqsr_intervals
  command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr_intervals -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
  tags:
    - gatk4
    - gatk4/applybqsr
  files:
    - path: output/gatk4/test.bam
      md5sum: a7a1d1373ac1529abbc5e05359718ab1
    - path: output/gatk4/versions.yml
      md5sum: 550eecbb88887fadf8c62c5992ae48af

- name: gatk4 applybqsr test_gatk4_applybqsr_cram
  command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr_cram -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
  tags:
    - gatk4
    - gatk4/applybqsr
  files:
    - path: output/gatk4/test.cram
      md5sum: b7659b3b2adaabbe73658dc059dbfdf6
    - path: output/gatk4/versions.yml
      md5sum: 57933f27b3a31b05af3f7c248d365396