name: bwa_index
description: Create BWA index for reference genome
keywords:
    - index
    - fasta
    - genome
    - reference
tools:
    - bwa:
        description: |
            BWA is a software package for mapping DNA sequences against
            a large reference genome, such as the human genome.
        homepage: http://bio-bwa.sourceforge.net/
        documentation: http://www.htslib.org/doc/samtools.html
        arxiv: arXiv:1303.3997
        licence: ['GPL-3.0-or-later']
input:
    - fasta:
        type: file
        description: Input genome fasta file
output:
    - index:
        type: file
        description: BWA genome index files
        pattern: "*.{amb,ann,bwt,pac,sa}"
    - versions:
        type: file
        description: File containing software versions
        pattern: "versions.yml"
authors:
    - "@drpatelh"
    - "@maxulysse"