def VERSION = '377' // Version information not provided by tool on CLI process UCSC_BIGWIGAVERAGEOVERBED { tag "$meta.id" label 'process_medium' conda (params.enable_conda ? "bioconda::ucsc-bigwigaverageoverbed=377" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ucsc-bigwigaverageoverbed:377--h0b8a92a_2' : 'quay.io/biocontainers/ucsc-bigwigaverageoverbed:377--h0b8a92a_2' }" input: tuple val(meta), path(bed) path bigwig output: tuple val(meta), path("*.tab"), emit: tab path "versions.yml" , emit: versions script: def args = task.ext.args ?: '' def prefix = task.ext.prefix ?: "${meta.id}" // BUG: bigWigAverageOverBed cannot handle ensembl seqlevels style """ bigWigAverageOverBed \\ $args \\ $bigwig \\ $bed \\ ${prefix}.tab cat <<-END_VERSIONS > versions.yml "${task.process}": ucsc: $VERSION END_VERSIONS """ }