process UCSC_BEDGRAPHTOBIGWIG { tag "$meta.id" label 'process_medium' // WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions. conda (params.enable_conda ? "bioconda::ucsc-bedgraphtobigwig=377" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ucsc-bedgraphtobigwig:377--h446ed27_1' : 'quay.io/biocontainers/ucsc-bedgraphtobigwig:377--h446ed27_1' }" input: tuple val(meta), path(bedgraph) path sizes output: tuple val(meta), path("*.bigWig"), emit: bigwig path "versions.yml" , emit: versions when: task.ext.when == null || task.ext.when script: def args = task.ext.args ?: '' def prefix = task.ext.prefix ?: "${meta.id}" def VERSION = '377' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions. """ bedGraphToBigWig \\ $bedgraph \\ $sizes \\ ${prefix}.bigWig cat <<-END_VERSIONS > versions.yml "${task.process}": ucsc: $VERSION END_VERSIONS """ }