name: gatk4_gatherbqsrreports description: write your description here keywords: - gatk4 - gatk4_gatherbqsrreports - base_recalibration tools: - gatk4: description: Genome Analysis Toolkit (GATK4) homepage: https://gatk.broadinstitute.org/hc/en-us documentation: https://gatk.broadinstitute.org/hc/en-us tool_dev_url: https://github.com/broadinstitute/gatk doi: "10.1158/1538-7445.AM2017-3590" licence: ['BSD-3-clause'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - recal_table: type: file description: File(s) containing BQSR table(s) pattern: "*.table" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - versions: type: file description: File containing software versions pattern: "versions.yml" - recal_table: type: file description: File containing joined BQSR table pattern: "*.table" authors: - "@FriederikeHanssen"