- name: bbmap bbsplit test_bbmap_bbsplit
  command: nextflow run ./tests/modules/bbmap/bbsplit -entry test_bbmap_bbsplit -c ./tests/config/nextflow.config -c ./tests/modules/bbmap/bbsplit/nextflow.config
  tags:
    - bbmap/bbsplit
    - bbmap
  files:
    - path: output/bbmap/bbsplit/ref/genome/1/chr1.chrom.gz
    - path: output/bbmap/bbsplit/ref/genome/1/info.txt
      contains:
        - "Chromosome"
    - path: output/bbmap/bbsplit/ref/genome/1/merged_ref_9222711925172838098.fa.gz
    - path: output/bbmap/bbsplit/ref/genome/1/namelist.txt
      md5sum: 45e7a4cdc7a11a39ada56844ca3a1e30
    - path: output/bbmap/bbsplit/ref/genome/1/reflist.txt
      contains:
        - "genome.fasta"
    - path: output/bbmap/bbsplit/ref/genome/1/scaffolds.txt.gz
    - path: output/bbmap/bbsplit/ref/genome/1/summary.txt
      contains:
        - "scaffolds"
    - path: output/bbmap/bbsplit/ref/index/1/chr1_index_k13_c13_b1.block
      md5sum: 385913c1e84b77dc7bf36288ee1c8706
    - path: output/bbmap/bbsplit/ref/index/1/chr1_index_k13_c13_b1.block2.gz
      md5sum: 9de572b603abe5b6540056db8dee05a5