#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { ULTRA_INDEX } from '../../../../modules/ultra/index/main.nf'
include { GFFREAD     } from '../../../../modules/gffread/main.nf'

workflow test_ultra_index {

    genome = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
    gtf    = file(params.test_data['homo_sapiens']['genome']['genome_gtf']  , checkIfExists: true)
    GFFREAD ( gtf )

    ULTRA_INDEX ( genome, GFFREAD.out.gtf )
}