- name: gatk4 markduplicates test_gatk4_markduplicates
  command: nextflow run tests/modules/gatk4/markduplicates -entry test_gatk4_markduplicates -c tests/config/nextflow.config
  tags:
    - gatk4/markduplicates
    - gatk4
  files:
    - path: output/gatk4/test.bai
      md5sum: e9c125e82553209933883b4fe2b8d7c2
    - path: output/gatk4/test.bam
      md5sum: bda9a7bf5057f2288ed70be3eb8a753f
    - path: output/gatk4/test.metrics

- name: gatk4 markduplicates test_gatk4_markduplicates_multiple_bams
  command: nextflow run tests/modules/gatk4/markduplicates -entry test_gatk4_markduplicates_multiple_bams -c tests/config/nextflow.config
  tags:
    - gatk4/markduplicates
    - gatk4
  files:
    - path: output/gatk4/test.bai
      md5sum: 93cebe29e7cca2064262b739235cca9b
    - path: output/gatk4/test.bam
      md5sum: dcd6f584006b04141fb787001a8ecacc
    - path: output/gatk4/test.metrics