def VERSION = '0.1.1' process HMMCOPY_GENERATEMAP { tag '$bam' label 'process_long' conda (params.enable_conda ? "bioconda::hmmcopy=0.1.1" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/hmmcopy:0.1.1--h2e03b76_7': 'quay.io/biocontainers/hmmcopy:0.1.1--h2e03b76_7' }" input: path fasta output: path "*.map.bw" , emit: bigwig path "versions.yml" , emit: versions script: def args = task.ext.args ?: '' """ # build required indexes generateMap.pl -b \\ $args \\ $fasta # run generateMap.pl \\ $args \\ $fasta cat <<-END_VERSIONS > versions.yml "${task.process}": hmmcopy: \$(echo $VERSION) END_VERSIONS """ }