name: "genescopefk"
description: A derivative of GenomeScope2.0 modified to work with FastK
keywords:
  - k-mer
  - genome profile
  - histogram
tools:
  - "genescopefk":
      description: "A derivative of GenomeScope2.0 modified to work with FastK"
      homepage: "https://github.com/thegenemyers/GENESCOPE.FK"
      documentation: ""
      tool_dev_url: "https://github.com/thegenemyers/GENESCOPE.FK"
      doi: ""
      licence: "https://github.com/thegenemyers/GENESCOPE.FK/blob/main/LICENSE"

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - fastk_histex_histogram:
      type: file
      description: A histogram formatted for GeneScope using the -G parameter from Fastk Histex
      pattern: "*.hist"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - linear_plot:
      type: file
      description: A GeneScope linear plot in PNG format
      pattern: "*_linear_plot.png"
  - transformed_linear_plot:
      type: file
      description: A GeneScope transformed linear plot in PNG format
      pattern: "*_transformed_linear_plot.png"
  - log_plot:
      type: file
      description: A GeneScope log plot in PNG format
      pattern: "*_log_plot.png"
  - transformed_log_plot:
      type: file
      description: A GeneScope transformed log plot in PNG format
      pattern: "*_transformed_log_plot.png"
  - model:
      type: file
      description: GeneScope model fit summary
      pattern: "*_model.txt"
  - summary:
      type: file
      description: GeneScope histogram summary
      pattern: "*_summary.txt"

authors:
  - "@mahesh-panchal"