- name: gatk4 markduplicates test_gatk4_markduplicates_spark
  command: nextflow run tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark -c tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config
  tags:
    - gatk4
    - gatk4/markduplicatesspark
  files:
    - path: output/gatk4/test.bai
      md5sum: e9c125e82553209933883b4fe2b8d7c2
    - path: output/gatk4/test.bam
      md5sum: 2efd50b2e6b7fd9bdf242cd9e266cfa9
    - path: output/gatk4/test.metrics
    - path: output/gatk4/versions.yml

- name: gatk4 markduplicates test_gatk4_markduplicates_spark_multiple_bams
  command: nextflow run tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark_multiple_bams -c tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config
  tags:
    - gatk4
    - gatk4/markduplicatesspark
  files:
    - path: output/gatk4/test.bai
      md5sum: bad71df9c876e72a5bc0a3e0fd755f92
    - path: output/gatk4/test.bam
      md5sum: 8187febc6108ffef7f907e89b9c091a4
    - path: output/gatk4/test.metrics
    - path: output/gatk4/versions.yml