name: fastqc on: push: paths: - software/fastqc/** - .github/workflows/fastqc.yml - tests pull_request: paths: - software/fastqc/** - .github/workflows/fastqc.yml - tests jobs: ci_test: runs-on: ubuntu-latest env: NXF_ANSI_LOG: false steps: - uses: actions/checkout@v2 - name: Install Nextflow run: | export NXF_VER="20.07.1" wget -qO- get.nextflow.io | bash sudo mv nextflow /usr/local/bin/ # Test the module - run: nextflow run ./software/fastqc/test/ -profile docker