name: "homer_pos2bed"
description: Coverting from HOMER peak to BED file formats
keywords:
  - peaks
tools:
  - "homer":
      description: |
        HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.
      homepage: "http://homer.ucsd.edu/homer/index.html"
      documentation: "http://homer.ucsd.edu/homer/"
      tool_dev_url: "http://homer.ucsd.edu/homer/ngs/miscellaneous.html"
      doi: 10.1016/j.molcel.2010.05.004.
      licence: ["GPL-3.0-or-later"]

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - tagDir:
      type: directory
      description: "The 'Tag Directory'"
      pattern: "tagDir"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - bed:
      type: file
      description: BED file
      pattern: "*.bed"
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"

authors:
  - "@Emiller88"